# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "MiRNAQCD" in publications use:'
type: software
license: GPL-3.0-only
title: 'MiRNAQCD: Micro-RNA Quality Control and Diagnosis'
version: 1.1.3
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MiRNAQCD
abstract: 'A complete and dedicated analytical toolbox for quality control and diagnosis
  based on subject-related measurements of micro-RNA (miRNA) expressions. The package
  consists of a set of functions that allow to train, optimize and use a Bayesian
  classifier that relies on multiplets of measured miRNA expressions. The package
  also implements the quality control tools required to preprocess input datasets.
  In addition, the package provides a function to carry out a statistical analysis
  of miRNA expressions, which can give insights to improve the classifier''s performance.
  The method implemented in the package was first introduced in L. Ricci, V. Del Vescovo,
  C. Cantaloni, M. Grasso, M. Barbareschi and M. A. Denti, "Statistical analysis of
  a Bayesian classifier based on the expression of miRNAs", BMC Bioinformatics 16:287,
  2015 <https://doi.org/10.1186/s12859-015-0715-9>. The package is thoroughly described
  in M. Castelluzzo, A. Perinelli, S. Detassis, M. A. Denti and L. Ricci, "MiRNA-QC-and-Diagnosis:
  An R package for diagnosis based on MiRNA expression", SoftwareX 12:100569, 2020
  <https://doi.org/10.1016/j.softx.2020.100569>. Please cite both these works if you
  use the package for your analysis. DISCLAIMER: The software in this package is for
  general research purposes only and is thus provided WITHOUT ANY WARRANTY. It is
  NOT intended to form the basis of clinical decisions. Please refer to the GNU General
  Public License 3.0 (GPLv3) for further information.'
authors:
- family-names: Castelluzzo
  given-names: Michele
  email: michele.castelluzzo@unitn.it
- family-names: Perinelli
  given-names: Alessio
  email: alessio.perinelli@unitn.it
- family-names: Detassis
  given-names: Simone
  email: simone.detassis@unitn.it
- family-names: Denti
  given-names: Michela Alessandra
  email: michela.denti@unitn.it
- family-names: Ricci
  given-names: Leonardo
  email: leonardo.ricci@unitn.it
preferred-citation:
  type: manual
  title: 'MiRNAQCD: Micro-RNA Quality Control and Diagnosis'
  authors:
  - family-names: Castelluzzo
    given-names: Michele
    email: michele.castelluzzo@unitn.it
  - family-names: Detassis
    given-names: Simone
    email: simone.detassis@unitn.it
  - family-names: Denti
    given-names: Michela Alessandra
    email: michela.denti@unitn.it
  - family-names: Ricci
    given-names: Leonardo
    email: leonardo.ricci@unitn.it
  year: '2023'
  notes: R package version 1.1.3
repository: https://alessioperinelli.r-universe.dev
commit: aefc863c9b01b12a2cb180a698121261758df540
date-released: '2023-04-28'
contact:
- family-names: Perinelli
  given-names: Alessio
  email: alessio.perinelli@unitn.it
references:
- type: article
  title: Statistical analysis of a Bayesian classifier based on the expression of
    miRNAs
  authors:
  - family-names: Ricci
    given-names: Leonardo
  - family-names: Del Vescovo
    given-names: Valerio
  - family-names: Cantaloni
    given-names: Chiara
  - family-names: Grasso
    given-names: Margherita
  - family-names: Barbareschi
    given-names: Mattia
  - family-names: Denti
    given-names: Michela Alessandra
  journal: BMC Bioinformatics
  year: '2015'
  volume: '16'
  doi: 10.1186/s12859-015-0715-9
  start: '287'
- type: article
  title: 'MiRNA-QC-and-Diagnosis: An R package for diagnosis based on MiRNA expression'
  authors:
  - family-names: Castelluzzo
    given-names: Michele
  - family-names: Perinelli
    given-names: Alessio
  - family-names: Detassis
    given-names: Simone
  - family-names: Denti
    given-names: Michela Alessandra
  - family-names: Ricci
    given-names: Leonardo
  journal: SoftwareX
  year: '2020'
  volume: '12'
  doi: 10.1016/j.softx.2020.100569
  start: '100569'