{
  "_id": "6a229cc8cd65a98ecbd57c80",
  "Package": "MiRNAQCD",
  "Version": "1.1.3",
  "Encoding": "UTF-8",
  "Date": "2023-04-28",
  "Title": "Micro-RNA Quality Control and Diagnosis",
  "Description": "A complete and dedicated analytical toolbox for quality\ncontrol and diagnosis based on subject-related measurements of\nmicro-RNA (miRNA) expressions. The package consists of a set of\nfunctions that allow to train, optimize and use a Bayesian\nclassifier that relies on multiplets of measured miRNA\nexpressions. The package also implements the quality control\ntools required to preprocess input datasets. In addition, the\npackage provides a function to carry out a statistical analysis\nof miRNA expressions, which can give insights to improve the\nclassifier's performance. The method implemented in the package\nwas first introduced in L. Ricci, V. Del Vescovo, C. Cantaloni,\nM. Grasso, M. Barbareschi and M. A. Denti, \"Statistical\nanalysis of a Bayesian classifier based on the expression of\nmiRNAs\", BMC Bioinformatics 16:287, 2015\n<doi:10.1186/s12859-015-0715-9>. The package is thoroughly\ndescribed in M. Castelluzzo, A. Perinelli, S. Detassis, M. A.\nDenti and L. Ricci, \"MiRNA-QC-and-Diagnosis: An R package for\ndiagnosis based on MiRNA expression\", SoftwareX 12:100569, 2020\n<doi:10.1016/j.softx.2020.100569>. Please cite both these works\nif you use the package for your analysis. DISCLAIMER: The\nsoftware in this package is for general research purposes only\nand is thus provided WITHOUT ANY WARRANTY. It is NOT intended\nto form the basis of clinical decisions. Please refer to the\nGNU General Public License 3.0 (GPLv3) for further information.",
  "Authors@R": "c(\nperson(\"Michele\", \"Castelluzzo\", email = \"michele.castelluzzo@unitn.it\", role = \"aut\"),\nperson(\"Alessio\", \"Perinelli\", email = \"alessio.perinelli@unitn.it\", role = \"cre\"),\nperson(\"Simone\", \"Detassis\", email = \"simone.detassis@unitn.it\", role = \"aut\"),\nperson(\"Michela Alessandra\", \"Denti\", email = \"michela.denti@unitn.it\", role = \"aut\"),\nperson(\"Leonardo\", \"Ricci\", email = \"leonardo.ricci@unitn.it\", role = \"aut\"))",
  "Maintainer": "Alessio Perinelli <alessio.perinelli@unitn.it>",
  "License": "GPL-3",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-05 09:51:00 UTC",
    "User": "root"
  },
  "Author": "Michele Castelluzzo [aut], Alessio Perinelli [cre], Simone\nDetassis [aut], Michela Alessandra Denti [aut], Leonardo Ricci\n[aut]",
  "Config/pak/sysreqs": "libjpeg-dev libssl-dev",
  "Repository": "https://alessioperinelli.r-universe.dev",
  "Date/Publication": "2023-05-02 06:00:02 UTC",
  "RemoteUrl": "https://github.com/cran/MiRNAQCD",
  "RemoteRef": "HEAD",
  "RemoteSha": "aefc863c9b01b12a2cb180a698121261758df540",
  "MD5sum": "325b73b561e918674d2c5507233d0bf9",
  "_user": "alessioperinelli",
  "_type": "src",
  "_file": "MiRNAQCD_1.1.3.tar.gz",
  "_fileid": "c1c476a8f209fb51012db12974f0af78c28614f57364e5bcfc6c982020234ac7",
  "_filesize": 658097,
  "_sha256": "c1c476a8f209fb51012db12974f0af78c28614f57364e5bcfc6c982020234ac7",
  "_created": "2026-06-05T09:51:00.000Z",
  "_published": "2026-06-05T09:54:16.871Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79704444673,
      "time": 163,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7433794001"
    },
    {
      "job": 79704444695,
      "time": 122,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7433780544"
    },
    {
      "job": 79704444823,
      "time": 144,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7433778148"
    },
    {
      "job": 79704444659,
      "time": 148,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7433781044"
    },
    {
      "job": 79704005381,
      "time": 172,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7433742037"
    },
    {
      "job": 79704444680,
      "time": 103,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7433774361"
    },
    {
      "job": 79704444740,
      "time": 79,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7433766835"
    },
    {
      "job": 79704444735,
      "time": 81,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7433767691"
    },
    {
      "job": 79704444699,
      "time": 71,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7433764587"
    }
  ],
  "_buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/MiRNAQCD",
  "_commit": {
    "id": "aefc863c9b01b12a2cb180a698121261758df540",
    "author": "Alessio Perinelli <alessio.perinelli@unitn.it>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.3\n",
    "time": 1683007202
  },
  "_maintainer": {
    "name": "Alessio Perinelli",
    "email": "alessio.perinelli@unitn.it",
    "login": "alessioperinelli",
    "description": "",
    "uuid": 45064638
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "pROC",
      "role": "Imports"
    },
    {
      "package": "qpdf",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "alessioperinelli",
      "count": 5,
      "uuid": 45064638
    }
  ],
  "_userbio": {
    "uuid": 45064638,
    "type": "user",
    "name": "Alessio Perinelli"
  },
  "_downloads": {
    "count": 152,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MiRNAQCD"
  },
  "_searchresults": 7,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MiRNAQCD.html",
    "manual.pdf"
  ],
  "_realowner": "alessioperinelli",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2020-06-25"
    },
    {
      "version": "1.1",
      "date": "2020-07-13"
    },
    {
      "version": "1.1.1",
      "date": "2021-02-10"
    },
    {
      "version": "1.1.2",
      "date": "2021-05-21"
    },
    {
      "version": "1.1.3",
      "date": "2023-05-02"
    }
  ],
  "_exports": [
    "miRNA_assessQualityThreshold",
    "miRNA_classifierSetup",
    "miRNA_diagnosis",
    "miRNA_expressionPreprocessing",
    "miRNA_loadDiagnosticThreshold",
    "miRNA_loadQualityThreshold",
    "miRNA_removeOutliers"
  ],
  "_help": [
    {
      "page": "miRNA_assessQualityThreshold",
      "title": "Assessment of quality threshold values.",
      "topics": [
        "miRNA_assessQualityThreshold"
      ]
    },
    {
      "page": "miRNA_classifierSetup",
      "title": "Analysis of features and training of classifiers.",
      "topics": [
        "miRNA_classifierSetup"
      ]
    },
    {
      "page": "miRNA_diagnosis",
      "title": "Classification of a dataset (diagnosis).",
      "topics": [
        "miRNA_diagnosis"
      ]
    },
    {
      "page": "miRNA_expressionPreprocessing",
      "title": "Pre-processing of datasets.",
      "topics": [
        "miRNA_expressionPreprocessing"
      ]
    },
    {
      "page": "miRNA_loadDiagnosticThreshold",
      "title": "Load diagnostic threshold values.",
      "topics": [
        "miRNA_loadDiagnosticThreshold"
      ]
    },
    {
      "page": "miRNA_loadQualityThreshold",
      "title": "Load quality threshold values.",
      "topics": [
        "miRNA_loadQualityThreshold"
      ]
    },
    {
      "page": "miRNA_plotHistograms",
      "title": "Plot of classifier distribution histograms (Target and Versus).",
      "topics": [
        "miRNA_plotHistograms"
      ]
    },
    {
      "page": "miRNA_plotROC",
      "title": "Plot of classifier ROC curve.",
      "topics": [
        "miRNA_plotROC"
      ]
    },
    {
      "page": "miRNA_plotThresholds",
      "title": "Plot of scores and thresholds of a Bayes classifier.",
      "topics": [
        "miRNA_plotThresholds"
      ]
    },
    {
      "page": "miRNA_removeOutliers",
      "title": "Removal of dataset outliers.",
      "topics": [
        "miRNA_removeOutliers"
      ]
    }
  ],
  "_rundeps": [
    "askpass",
    "cli",
    "cpp11",
    "curl",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "pROC",
    "qpdf",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "sys",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "mirnaqcd",
  "_universes": [
    "alessioperinelli"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-06-05T09:53:43.000Z",
      "distro": "noble",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "ef21020d52c794495038017d7480cbab313a4b8ac9478c0c11f25861df12c72b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-06-05T09:53:02.000Z",
      "distro": "noble",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "e5b19f9d930271f025c02349f3354b7f9cfce1780ed967dc03ea23aaf562c436",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-06-05T09:52:59.000Z",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "66e0ed3831721baf3cd65fc4ed0f2720b140d00f23ddcbd1ce52d4a268ca4ef5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-06-05T09:53:07.000Z",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "99a0578e095df3a019fc05cc807088a6778b64066bb2c1fdc56b5478bfd1389d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.3",
      "date": "2026-06-05T09:52:58.000Z",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "e2ebed1b84fb45643c8814e45070b416fa198aa98fac8e6eeed728d4dbc64c29",
      "status": "success",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-06-05T09:52:12.000Z",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "3a71ac93760f734e20e59db776572c5c494a7604353a5eb571ad84fe9a4ecf43",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-06-05T09:52:13.000Z",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "5cf5022294735026843b71670bdcc6ed8860830d1a980d19c73e51fb719df0d2",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-06-05T09:52:05.000Z",
      "commit": "aefc863c9b01b12a2cb180a698121261758df540",
      "fileid": "5ce1c6b61155df3719c7436f977d23a43b50816f56a3adb53e7a4fa160b38d2d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/alessioperinelli/actions/runs/27007885467"
    }
  ]
}